HCSGD entry for CSPG5
1. General information
| Official gene symbol | CSPG5 |
|---|---|
| Entrez ID | 10675 |
| Gene full name | chondroitin sulfate proteoglycan 5 (neuroglycan C) |
| Other gene symbols | NGC |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005796 | Golgi lumen | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0007399 | Nervous system development | TAS | biological_process |
| GO:0008083 | Growth factor activity | TAS | molecular_function |
| GO:0016020 | Membrane | TAS | cellular_component |
| GO:0016021 | Integral component of membrane | TAS | cellular_component |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | TAS | biological_process |
| GO:0030207 | Chondroitin sulfate catabolic process | TAS | biological_process |
| GO:0030208 | Dermatan sulfate biosynthetic process | TAS | biological_process |
| GO:0030660 | Golgi-associated vesicle membrane | IDA | cellular_component |
| GO:0031103 | Axon regeneration | IEA | biological_process |
| GO:0040008 | Regulation of growth | IEA | biological_process |
| GO:0043202 | Lysosomal lumen | TAS | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0046907 | Intracellular transport | TAS | biological_process |
| GO:0050804 | Regulation of synaptic transmission | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7842674518 | 0.7336431139 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0510649271 |
| GSE13712_SHEAR | Up | 0.0221634483 |
| GSE13712_STATIC | Down | -0.1731016125 |
| GSE19018 | Up | 0.0463342701 |
| GSE19899_A1 | Up | 0.1846948448 |
| GSE19899_A2 | Up | 0.1719203846 |
| PubMed_21979375_A1 | Down | -0.0158635082 |
| PubMed_21979375_A2 | Down | -0.1203002123 |
| GSE35957 | Down | -0.0679391724 |
| GSE36640 | Down | -0.1016170022 |
| GSE54402 | Down | -0.0190371947 |
| GSE9593 | Down | -0.0937306526 |
| GSE43922 | Up | 0.0365365330 |
| GSE24585 | Down | -0.0186155882 |
| GSE37065 | Up | 0.0114696116 |
| GSE28863_A1 | Down | -0.3410589666 |
| GSE28863_A2 | Up | 0.1340324389 |
| GSE28863_A3 | Up | 0.2240808585 |
| GSE28863_A4 | Up | 0.0646188595 |
| GSE48662 | Up | 0.0639655637 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029790 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049719 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-3691-5p | MIMAT0018120 | MIRT052881 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
