HCSGD entry for TRIM16
1. General information
| Official gene symbol | TRIM16 |
|---|---|
| Entrez ID | 10626 |
| Gene full name | tripartite motif containing 16 |
| Other gene symbols | EBBP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016605 | PML body | IDA | cellular_component |
| GO:0019966 | Interleukin-1 binding | IPI | molecular_function |
| GO:0032089 | NACHT domain binding | IPI | molecular_function |
| GO:0032526 | Response to retinoic acid | IEP | biological_process |
| GO:0043966 | Histone H3 acetylation | IDA | biological_process |
| GO:0043967 | Histone H4 acetylation | IDA | biological_process |
| GO:0045618 | Positive regulation of keratinocyte differentiation | IDA | biological_process |
| GO:0045893 | Positive regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0046683 | Response to organophosphorus | IEP | biological_process |
| GO:0048386 | Positive regulation of retinoic acid receptor signaling pathway | IDA | biological_process |
| GO:0050718 | Positive regulation of interleukin-1 beta secretion | IMP | biological_process |
| GO:0060416 | Response to growth hormone | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9846618745 | 0.0032527867 | 0.9999902473 | 0.1150760753 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2134834639 |
| GSE13712_SHEAR | Down | -0.0212503128 |
| GSE13712_STATIC | Down | -0.6877668880 |
| GSE19018 | Down | -1.3588902146 |
| GSE19899_A1 | Down | -0.5203391218 |
| GSE19899_A2 | Down | -0.8815941044 |
| PubMed_21979375_A1 | Down | -0.2680483824 |
| PubMed_21979375_A2 | Down | -0.2404558727 |
| GSE35957 | Down | -0.8869763038 |
| GSE36640 | Down | -0.2643778239 |
| GSE54402 | Down | -0.5190102003 |
| GSE9593 | Up | 0.4294284183 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.3788519250 |
| GSE28863_A2 | Down | -0.8693687195 |
| GSE28863_A3 | Down | -0.1565355421 |
| GSE28863_A4 | Down | -0.0234196810 |
| GSE48662 | - | - |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017852 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
