HCSGD entry for TRIM3
1. General information
| Official gene symbol | TRIM3 |
|---|---|
| Entrez ID | 10612 |
| Gene full name | tripartite motif containing 3 |
| Other gene symbols | BERP HAC1 RNF22 RNF97 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA TAS | cellular_component |
| GO:0005769 | Early endosome | IEA | cellular_component |
| GO:0007399 | Nervous system development | TAS | biological_process |
| GO:0008022 | Protein C-terminus binding | TAS | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0015031 | Protein transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2583452642 | 0.9217098135 | 0.9522343789 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0615235815 |
| GSE13712_SHEAR | Up | 0.0521142648 |
| GSE13712_STATIC | Up | 0.1766166109 |
| GSE19018 | Down | -0.0012133511 |
| GSE19899_A1 | Down | -0.0323139592 |
| GSE19899_A2 | Up | 0.2802665121 |
| PubMed_21979375_A1 | Up | 0.2775371193 |
| PubMed_21979375_A2 | Up | 0.5720291427 |
| GSE35957 | Down | -0.0786569125 |
| GSE36640 | Up | 0.2035380200 |
| GSE54402 | Up | 0.1059475702 |
| GSE9593 | Up | 0.0993909283 |
| GSE43922 | Up | 0.0539197988 |
| GSE24585 | Down | -0.0197899026 |
| GSE37065 | Down | -0.1006540373 |
| GSE28863_A1 | Down | -0.0394873736 |
| GSE28863_A2 | Up | 0.1385610576 |
| GSE28863_A3 | Up | 0.0900142010 |
| GSE28863_A4 | Up | 0.0608053040 |
| GSE48662 | Up | 0.0921477104 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017768 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
