HCSGD entry for LEPREL4
1. General information
| Official gene symbol | LEPREL4 |
|---|---|
| Entrez ID | 10609 |
| Gene full name | leprecan-like 4 |
| Other gene symbols | NO55 NOL55 SC65 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000794 | Condensed nuclear chromosome | TAS | cellular_component |
| GO:0000795 | Synaptonemal complex | TAS | cellular_component |
| GO:0005730 | Nucleolus | IEA | cellular_component |
| GO:0007130 | Synaptonemal complex assembly | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6985092740 | 0.0495718400 | 0.9999902473 | 0.4167296072 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4723835694 |
| GSE13712_SHEAR | Up | 0.0927324717 |
| GSE13712_STATIC | Down | -0.0806513402 |
| GSE19018 | Up | 0.1730769164 |
| GSE19899_A1 | Down | -0.4352511664 |
| GSE19899_A2 | Down | -0.4683860252 |
| PubMed_21979375_A1 | Up | 0.4034650021 |
| PubMed_21979375_A2 | Down | -0.3195705014 |
| GSE35957 | Down | -0.5432618472 |
| GSE36640 | Up | 0.7262808741 |
| GSE54402 | Down | -0.5587533744 |
| GSE9593 | Down | -0.6521243423 |
| GSE43922 | Up | 0.0508054132 |
| GSE24585 | Down | -0.3542275661 |
| GSE37065 | Down | -0.4079465299 |
| GSE28863_A1 | Up | 0.1362156889 |
| GSE28863_A2 | Up | 0.0799033437 |
| GSE28863_A3 | Up | 0.2846871430 |
| GSE28863_A4 | Up | 0.0116024977 |
| GSE48662 | Up | 0.2443573981 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023812 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-1303 | MIMAT0005891 | MIRT035892 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036422 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036892 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-421 | MIMAT0003339 | MIRT039456 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050620 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
