HCSGD entry for NOP56
1. General information
| Official gene symbol | NOP56 |
|---|---|
| Entrez ID | 10528 |
| Gene full name | NOP56 ribonucleoprotein |
| Other gene symbols | NOL5A SCA36 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005730 | Nucleolus | TAS | cellular_component |
| GO:0005732 | Small nucleolar ribonucleoprotein complex | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006364 | RRNA processing | TAS | biological_process |
| GO:0008219 | Cell death | IEA | biological_process |
| GO:0030515 | SnoRNA binding | IDA | molecular_function |
| GO:0031428 | Box C/D snoRNP complex | NAS | cellular_component |
| GO:0070761 | Pre-snoRNP complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9534117967 | 0.5150231184 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | - | - |
| GSE13712_SHEAR | - | - |
| GSE13712_STATIC | - | - |
| GSE19018 | - | - |
| GSE19899_A1 | - | - |
| GSE19899_A2 | - | - |
| PubMed_21979375_A1 | - | - |
| PubMed_21979375_A2 | - | - |
| GSE35957 | - | - |
| GSE36640 | - | - |
| GSE54402 | - | - |
| GSE9593 | - | - |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.0163561659 |
| GSE28863_A2 | Down | -0.0766490792 |
| GSE28863_A3 | Down | -0.0038310557 |
| GSE28863_A4 | Up | 0.3179612821 |
| GSE48662 | Down | -0.4009022105 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-24-3p | MIMAT0000080 | MIRT030362 | Microarray | Functional MTI (Weak) | 19748357 |
| hsa-miR-31-5p | MIMAT0000089 | MIRT049889 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
