HCSGD entry for VAT1
1. General information
| Official gene symbol | VAT1 |
|---|---|
| Entrez ID | 10493 |
| Gene full name | vesicle amine transport protein 1 homolog (T. californica) |
| Other gene symbols | VATI |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005741 | Mitochondrial outer membrane | IEA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0010637 | Negative regulation of mitochondrial fusion | IMP | biological_process |
| GO:0016021 | Integral component of membrane | TAS | cellular_component |
| GO:0016491 | Oxidoreductase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0075414802 | 0.9224531591 | 0.2268563429 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5785212446 |
| GSE13712_SHEAR | Up | 0.0321111224 |
| GSE13712_STATIC | Up | 0.0225440626 |
| GSE19018 | Up | 0.5040964413 |
| GSE19899_A1 | Up | 0.6861122737 |
| GSE19899_A2 | Up | 1.1579472616 |
| PubMed_21979375_A1 | Up | 0.3535183136 |
| PubMed_21979375_A2 | Up | 1.8808411375 |
| GSE35957 | Down | -0.6169059335 |
| GSE36640 | Up | 0.9684612620 |
| GSE54402 | Up | 0.1700894987 |
| GSE9593 | Up | 1.0880848188 |
| GSE43922 | Up | 0.0107094649 |
| GSE24585 | Up | 0.0012470356 |
| GSE37065 | Down | -0.3749303449 |
| GSE28863_A1 | Down | -0.0548273836 |
| GSE28863_A2 | Up | 0.3213526136 |
| GSE28863_A3 | Down | -0.4527809978 |
| GSE28863_A4 | Up | 0.0178852048 |
| GSE48662 | Up | 0.1546108542 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016832 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048825 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
