HCSGD entry for SYNCRIP
1. General information
| Official gene symbol | SYNCRIP |
|---|---|
| Entrez ID | 10492 |
| Gene full name | synaptotagmin binding, cytoplasmic RNA interacting protein |
| Other gene symbols | GRY-RBP GRYRBP HNRNPQ HNRPQ1 NSAP1 PP68 hnRNP-Q |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000398 | MRNA splicing, via spliceosome | IC | biological_process |
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0005654 | Nucleoplasm | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0008143 | Poly(A) binding | IEA | molecular_function |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0016032 | Viral process | IEA | biological_process |
| GO:0017148 | Negative regulation of translation | IDA IMP | biological_process |
| GO:0030529 | Ribonucleoprotein complex | IDA | cellular_component |
| GO:0070934 | CRD-mediated mRNA stabilization | IMP | biological_process |
| GO:0070937 | CRD-mediated mRNA stability complex | IDA | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
| GO:0071204 | Histone pre-mRNA 3'end processing complex | IEA ISS | cellular_component |
| GO:0071346 | Cellular response to interferon-gamma | IDA | biological_process |
| GO:0097452 | GAIT complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9811199461 | 0.0484638236 | 0.9999902473 | 0.4119569906 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1820919558 |
| GSE13712_SHEAR | Down | -0.0227338929 |
| GSE13712_STATIC | Down | -0.0406910345 |
| GSE19018 | Down | -0.6902497171 |
| GSE19899_A1 | Down | -0.3555684257 |
| GSE19899_A2 | Down | -0.1897966443 |
| PubMed_21979375_A1 | Down | -0.3993791257 |
| PubMed_21979375_A2 | Down | -0.3021679081 |
| GSE35957 | Down | -0.1140437045 |
| GSE36640 | Down | -0.7416765413 |
| GSE54402 | Up | 0.0172921791 |
| GSE9593 | Down | -0.2725564247 |
| GSE43922 | Down | -0.0187203515 |
| GSE24585 | Down | -0.3092042803 |
| GSE37065 | Down | -0.0548145658 |
| GSE28863_A1 | Down | -0.0413908080 |
| GSE28863_A2 | Up | 0.2135814598 |
| GSE28863_A3 | Up | 0.0867639169 |
| GSE28863_A4 | Up | 0.0800375215 |
| GSE48662 | Down | -0.1357910754 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019684 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026132 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028770 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036914 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT043586 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-29a-3p | MIMAT0000086 | MIRT049985 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
