HCSGD entry for SEC23A
1. General information
| Official gene symbol | SEC23A |
|---|---|
| Entrez ID | 10484 |
| Gene full name | Sec23 homolog A (S. cerevisiae) |
| Other gene symbols | CLSD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0002474 | Antigen processing and presentation of peptide antigen via MHC class I | TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005783 | Endoplasmic reticulum | TAS | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | TAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0012507 | ER to Golgi transport vesicle membrane | TAS | cellular_component |
| GO:0016192 | Vesicle-mediated transport | TAS | biological_process |
| GO:0018279 | Protein N-linked glycosylation via asparagine | TAS | biological_process |
| GO:0019886 | Antigen processing and presentation of exogenous peptide antigen via MHC class II | TAS | biological_process |
| GO:0030127 | COPII vesicle coat | IEA | cellular_component |
| GO:0030868 | Smooth endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0048208 | COPII vesicle coating | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9738044679 | 0.0277062650 | 0.9999902473 | 0.3169559896 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2760644933 |
| GSE13712_SHEAR | Down | -0.0267513575 |
| GSE13712_STATIC | Up | 0.0048471160 |
| GSE19018 | Up | 0.0848676694 |
| GSE19899_A1 | Down | -0.2751952688 |
| GSE19899_A2 | Down | -0.5143921245 |
| PubMed_21979375_A1 | Down | -0.9970634547 |
| PubMed_21979375_A2 | Down | -0.7741655667 |
| GSE35957 | Up | 0.0155755005 |
| GSE36640 | Down | -0.1935273008 |
| GSE54402 | Down | -0.2161916560 |
| GSE9593 | Down | -0.0402925355 |
| GSE43922 | Down | -0.1299623096 |
| GSE24585 | Up | 0.3450673959 |
| GSE37065 | Down | -0.1894143303 |
| GSE28863_A1 | Down | -0.1083008708 |
| GSE28863_A2 | Down | -0.0196233968 |
| GSE28863_A3 | Down | -0.8255806459 |
| GSE28863_A4 | Up | 0.1173782606 |
| GSE48662 | Down | -0.3555123066 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005152 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016564 | Proteomics | Functional MTI (Weak) | 21512034 |
| hsa-miR-375 | MIMAT0000728 | MIRT020062 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028115 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
