HCSGD entry for SEC23B
1. General information
| Official gene symbol | SEC23B |
|---|---|
| Entrez ID | 10483 |
| Gene full name | Sec23 homolog B (S. cerevisiae) |
| Other gene symbols | CDA-II CDAII CDAN2 HEMPAS |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016020 | Membrane | TAS | cellular_component |
| GO:0016192 | Vesicle-mediated transport | TAS | biological_process |
| GO:0030127 | COPII vesicle coat | IEA | cellular_component |
| GO:0033116 | Endoplasmic reticulum-Golgi intermediate compartment membrane | IEA | cellular_component |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0913053341 | 0.5327033205 | 0.6362848028 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4550181692 |
| GSE13712_SHEAR | Up | 0.1007685691 |
| GSE13712_STATIC | Up | 0.3300095235 |
| GSE19018 | Down | -0.2164514991 |
| GSE19899_A1 | Up | 0.2018416207 |
| GSE19899_A2 | Up | 0.3290438387 |
| PubMed_21979375_A1 | Up | 0.5402384664 |
| PubMed_21979375_A2 | Up | 0.1385376924 |
| GSE35957 | Down | -0.0995928444 |
| GSE36640 | Up | 0.6693125896 |
| GSE54402 | Up | 0.2563261967 |
| GSE9593 | Down | -0.3360105952 |
| GSE43922 | Up | 0.0930123138 |
| GSE24585 | Up | 0.2334799310 |
| GSE37065 | Up | 0.2483780005 |
| GSE28863_A1 | Down | -0.3805607249 |
| GSE28863_A2 | Up | 0.1208736084 |
| GSE28863_A3 | Down | -0.8309640642 |
| GSE28863_A4 | Up | 0.1040226700 |
| GSE48662 | Down | -0.5961254890 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020211 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024934 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026508 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031137 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032362 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
