HCSGD entry for HMGN4
1. General information
| Official gene symbol | HMGN4 |
|---|---|
| Entrez ID | 10473 |
| Gene full name | high mobility group nucleosomal binding domain 4 |
| Other gene symbols | HMG17L3 NHC |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000785 | Chromatin | IEA | cellular_component |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0031492 | Nucleosomal DNA binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9774913453 | 0.0263846130 | 0.9999902473 | 0.3113258961 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0589785417 |
| GSE13712_SHEAR | Up | 0.3634916638 |
| GSE13712_STATIC | Up | 0.2950183429 |
| GSE19018 | Up | 0.0720715683 |
| GSE19899_A1 | Down | -0.5471781001 |
| GSE19899_A2 | Down | -0.2117809157 |
| PubMed_21979375_A1 | Down | -0.8486678312 |
| PubMed_21979375_A2 | Down | -0.3249628387 |
| GSE35957 | Up | 0.0027730335 |
| GSE36640 | Down | -0.4874349340 |
| GSE54402 | Down | -0.1606405572 |
| GSE9593 | Down | -0.1938306429 |
| GSE43922 | Down | -0.2427608449 |
| GSE24585 | Down | -0.0171157080 |
| GSE37065 | Down | -0.1043490033 |
| GSE28863_A1 | Up | 0.0141448461 |
| GSE28863_A2 | Down | -0.1348956653 |
| GSE28863_A3 | Down | -0.8336983927 |
| GSE28863_A4 | Down | -0.1825170897 |
| GSE48662 | Down | -0.7385531065 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022292 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025702 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039769 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-505-3p | MIMAT0002876 | MIRT041040 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 25046437 | We used two well-established normal human cholangiocyte cell lines (H69 and NHC) as controls |
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