HCSGD entry for SYCP2
1. General information
| Official gene symbol | SYCP2 |
|---|---|
| Entrez ID | 10388 |
| Gene full name | synaptonemal complex protein 2 |
| Other gene symbols | SCP2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000795 | Synaptonemal complex | NAS | cellular_component |
| GO:0000800 | Lateral element | IEA | cellular_component |
| GO:0003677 | DNA binding | NAS | molecular_function |
| GO:0005634 | Nucleus | NAS | cellular_component |
| GO:0007128 | Meiotic prophase I | NAS | biological_process |
| GO:0007130 | Synaptonemal complex assembly | NAS | biological_process |
| GO:0007140 | Male meiosis | IEA | biological_process |
| GO:0007143 | Female meiosis | IEA | biological_process |
| GO:0009566 | Fertilization | IEA | biological_process |
| GO:0043066 | Negative regulation of apoptotic process | IEA | biological_process |
| GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
| GO:0048808 | Male genitalia morphogenesis | IEA | biological_process |
| GO:0051301 | Cell division | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6785446032 | 0.4045364842 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0850310414 |
| GSE13712_SHEAR | Down | -0.0737424953 |
| GSE13712_STATIC | Up | 0.0798217273 |
| GSE19018 | Up | 0.0038081824 |
| GSE19899_A1 | Up | 0.0600422860 |
| GSE19899_A2 | Down | -0.1500300570 |
| PubMed_21979375_A1 | Down | -0.4789080104 |
| PubMed_21979375_A2 | Down | -0.1303502836 |
| GSE35957 | Down | -0.4696793443 |
| GSE36640 | Up | 0.0126740882 |
| GSE54402 | Up | 0.0239834051 |
| GSE9593 | Up | 0.0042714945 |
| GSE43922 | Down | -0.1417699298 |
| GSE24585 | Up | 0.9936357106 |
| GSE37065 | Up | 0.1296904824 |
| GSE28863_A1 | Up | 0.0662006229 |
| GSE28863_A2 | Up | 0.0052341582 |
| GSE28863_A3 | Down | -0.0448504961 |
| GSE28863_A4 | Up | 0.0116086165 |
| GSE48662 | Down | -0.3087874699 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
