HCSGD entry for HMG20A
1. General information
| Official gene symbol | HMG20A |
|---|---|
| Entrez ID | 10363 |
| Gene full name | high mobility group 20A |
| Other gene symbols | HMGX1 HMGXB1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0003677 | DNA binding | NAS | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA IEA NAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006325 | Chromatin organization | NAS | biological_process |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | NAS | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0045665 | Negative regulation of neuron differentiation | IEA | biological_process |
| GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7900046503 | 0.1871962387 | 0.9999902473 | 0.8388137896 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2401874083 |
| GSE13712_SHEAR | Down | -0.2406312184 |
| GSE13712_STATIC | Down | -0.0577733631 |
| GSE19018 | Up | 0.1650489179 |
| GSE19899_A1 | Down | -0.1839908422 |
| GSE19899_A2 | Up | 0.0392455477 |
| PubMed_21979375_A1 | Up | 0.3527306598 |
| PubMed_21979375_A2 | Up | 0.3715945844 |
| GSE35957 | Down | -0.1302555154 |
| GSE36640 | Down | -0.5269510171 |
| GSE54402 | Down | -0.0447372514 |
| GSE9593 | Down | -0.3982402041 |
| GSE43922 | Up | 0.0219029646 |
| GSE24585 | Up | 0.1867662762 |
| GSE37065 | Up | 0.0649781921 |
| GSE28863_A1 | Up | 0.2623165698 |
| GSE28863_A2 | Up | 0.0571564609 |
| GSE28863_A3 | Down | -0.3594837084 |
| GSE28863_A4 | Up | 0.0294760881 |
| GSE48662 | Down | -0.4605819857 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047829 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050496 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
