HCSGD entry for PCGF3
1. General information
| Official gene symbol | PCGF3 |
|---|---|
| Entrez ID | 10336 |
| Gene full name | polycomb group ring finger 3 |
| Other gene symbols | DONG1 RNF3 RNF3A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0031519 | PcG protein complex | IDA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4028236389 | 0.6129945025 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0147062920 |
| GSE13712_SHEAR | Down | -0.2692693294 |
| GSE13712_STATIC | Down | -0.0811358162 |
| GSE19018 | Down | -0.0866043896 |
| GSE19899_A1 | Up | 0.1626105107 |
| GSE19899_A2 | Up | 0.7290218814 |
| PubMed_21979375_A1 | Up | 0.2985132311 |
| PubMed_21979375_A2 | Up | 0.5064448480 |
| GSE35957 | Down | -0.0490251614 |
| GSE36640 | Down | -0.0097748013 |
| GSE54402 | Up | 0.4030444394 |
| GSE9593 | Down | -0.1160973251 |
| GSE43922 | Up | 0.3614569830 |
| GSE24585 | Down | -0.2319335757 |
| GSE37065 | Up | 0.0176794903 |
| GSE28863_A1 | Down | -0.1442464176 |
| GSE28863_A2 | Down | -0.3545255811 |
| GSE28863_A3 | Down | -0.0985534757 |
| GSE28863_A4 | Down | -0.0693809239 |
| GSE48662 | Down | -0.0072904976 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026048 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7d-5p | MIMAT0000065 | MIRT032156 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051823 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052339 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
