HCSGD entry for SRRM1
1. General information
| Official gene symbol | SRRM1 |
|---|---|
| Entrez ID | 10250 |
| Gene full name | serine/arginine repetitive matrix 1 |
| Other gene symbols | 160-KD POP101 SRM160 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000375 | RNA splicing, via transesterification reactions | TAS | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006369 | Termination of RNA polymerase II transcription | TAS | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0006406 | MRNA export from nucleus | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016363 | Nuclear matrix | IEA | cellular_component |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
| GO:0031124 | MRNA 3'-end processing | TAS | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9081098514 | 0.3095740929 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0373735938 |
| GSE13712_SHEAR | Down | -0.0732499169 |
| GSE13712_STATIC | Down | -0.0851207803 |
| GSE19018 | Up | 0.0704657603 |
| GSE19899_A1 | Down | -0.1934645660 |
| GSE19899_A2 | Up | 0.0664191920 |
| PubMed_21979375_A1 | Up | 0.3433243216 |
| PubMed_21979375_A2 | Up | 0.3128327887 |
| GSE35957 | Down | -0.4422089448 |
| GSE36640 | Down | -0.6339485132 |
| GSE54402 | Up | 0.0714234263 |
| GSE9593 | Down | -0.2800829224 |
| GSE43922 | Down | -0.0720833940 |
| GSE24585 | Down | -0.0043856528 |
| GSE37065 | Up | 0.0594911233 |
| GSE28863_A1 | Up | 0.0631148412 |
| GSE28863_A2 | Up | 0.0205523677 |
| GSE28863_A3 | Up | 0.0722592739 |
| GSE28863_A4 | Down | -0.0670230960 |
| GSE48662 | Down | -0.1424296225 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023485 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-760 | MIMAT0004957 | MIRT036777 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043025 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-326 | MIMAT0000756 | MIRT043660 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
