HCSGD entry for CALCOCO2
1. General information
| Official gene symbol | CALCOCO2 |
|---|---|
| Entrez ID | 10241 |
| Gene full name | calcium binding and coiled-coil domain 2 |
| Other gene symbols | NDP52 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0034341 | Response to interferon-gamma | IDA | biological_process |
| GO:0042803 | Protein homodimerization activity | IPI | molecular_function |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0228890012 | 0.9731392500 | 0.3609714799 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0230740991 |
| GSE13712_SHEAR | Down | -0.1695259033 |
| GSE13712_STATIC | Down | -0.2119572937 |
| GSE19018 | Up | 0.3096807522 |
| GSE19899_A1 | Up | 0.2870322152 |
| GSE19899_A2 | Up | 0.2995945835 |
| PubMed_21979375_A1 | Up | 0.3646826587 |
| PubMed_21979375_A2 | Up | 0.2629047476 |
| GSE35957 | Down | -0.1124113112 |
| GSE36640 | Up | 0.5829397317 |
| GSE54402 | Up | 0.0377819342 |
| GSE9593 | Up | 0.2481562403 |
| GSE43922 | Up | 0.4291872727 |
| GSE24585 | Up | 0.7141801595 |
| GSE37065 | Up | 0.1154458948 |
| GSE28863_A1 | Up | 0.5739535649 |
| GSE28863_A2 | Up | 0.1611208983 |
| GSE28863_A3 | Up | 0.0080533296 |
| GSE28863_A4 | Up | 0.2958261191 |
| GSE48662 | Down | -0.0698373785 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT001647 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-142-3p | MIMAT0000434 | MIRT021616 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028168 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7d-5p | MIMAT0000065 | MIRT032106 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-361-5p | MIMAT0000703 | MIRT044091 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
