HCSGD entry for DDX39A
1. General information
| Official gene symbol | DDX39A |
|---|---|
| Entrez ID | 10212 |
| Gene full name | DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A |
| Other gene symbols | BAT1 BAT1L DDX39 DDXL URH49 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IGI | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006406 | MRNA export from nucleus | IGI | biological_process |
| GO:0008026 | ATP-dependent helicase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6391395920 | 0.0076146689 | 0.9999902473 | 0.1744348999 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6212421328 |
| GSE13712_SHEAR | Down | -0.2013630749 |
| GSE13712_STATIC | Down | -0.1719101183 |
| GSE19018 | Down | -0.8097524804 |
| GSE19899_A1 | Down | -0.9136361726 |
| GSE19899_A2 | Down | -0.4879829294 |
| PubMed_21979375_A1 | Up | 1.0696075916 |
| PubMed_21979375_A2 | Down | -0.6470655601 |
| GSE35957 | Down | -2.2520692928 |
| GSE36640 | Down | -2.5965443310 |
| GSE54402 | Up | 0.6407447300 |
| GSE9593 | Down | -0.9693262626 |
| GSE43922 | Up | 0.0316546274 |
| GSE24585 | Down | -0.5056992732 |
| GSE37065 | Down | -0.0401108727 |
| GSE28863_A1 | Down | -0.0691899283 |
| GSE28863_A2 | Up | 0.1512953045 |
| GSE28863_A3 | Up | 0.1190783659 |
| GSE28863_A4 | Up | 0.2193395719 |
| GSE48662 | Down | -0.7536994724 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-421 | MIMAT0003339 | MIRT016108 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-421 | MIMAT0003339 | MIRT016108 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-378a-3p | MIMAT0000732 | MIRT019655 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039528 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99b-5p | MIMAT0000689 | MIRT044183 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049339 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
