HCSGD entry for TRIM13
1. General information
| Official gene symbol | TRIM13 |
|---|---|
| Entrez ID | 10206 |
| Gene full name | tripartite motif containing 13 |
| Other gene symbols | CAR DLEU5 LEU5 RFP2 RNF77 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004842 | Ubiquitin-protein ligase activity | IDA | molecular_function |
| GO:0004871 | Signal transducer activity | IMP | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IDA | cellular_component |
| GO:0007165 | Signal transduction | IMP | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0009653 | Anatomical structure morphogenesis | TAS | biological_process |
| GO:0010332 | Response to gamma radiation | IEP | biological_process |
| GO:0010942 | Positive regulation of cell death | IDA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016239 | Positive regulation of macroautophagy | IDA | biological_process |
| GO:0030433 | ER-associated ubiquitin-dependent protein catabolic process | IDA | biological_process |
| GO:0043123 | Positive regulation of I-kappaB kinase/NF-kappaB signaling | IMP | biological_process |
| GO:0043161 | Proteasome-mediated ubiquitin-dependent protein catabolic process | IDA | biological_process |
| GO:0051865 | Protein autoubiquitination | IDA | biological_process |
| GO:0097038 | Perinuclear endoplasmic reticulum | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5100488583 | 0.4462658790 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2999450184 |
| GSE13712_SHEAR | Up | 0.1687861275 |
| GSE13712_STATIC | Up | 0.0434418148 |
| GSE19018 | Down | -0.4794571510 |
| GSE19899_A1 | Down | -0.0392433253 |
| GSE19899_A2 | Up | 0.0960181758 |
| PubMed_21979375_A1 | Up | 0.0925467709 |
| PubMed_21979375_A2 | Down | -0.3313990905 |
| GSE35957 | Up | 0.1542895558 |
| GSE36640 | Up | 0.1322570070 |
| GSE54402 | Down | -0.2828816991 |
| GSE9593 | Up | 0.1578129167 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 0.3397125901 |
| GSE28863_A2 | Down | -0.0094445407 |
| GSE28863_A3 | Down | -0.3895112192 |
| GSE28863_A4 | Up | 0.1161691735 |
| GSE48662 | Up | 0.0134932725 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028784 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
