HCSGD entry for RCL1
1. General information
| Official gene symbol | RCL1 |
|---|---|
| Entrez ID | 10171 |
| Gene full name | RNA terminal phosphate cyclase-like 1 |
| Other gene symbols | RNAC RPCL1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003824 | Catalytic activity | IEA | molecular_function |
| GO:0003963 | RNA-3'-phosphate cyclase activity | NAS | molecular_function |
| GO:0005730 | Nucleolus | IEA | cellular_component |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0042254 | Ribosome biogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4140109114 | 0.4638694123 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1161308656 |
| GSE13712_SHEAR | Up | 0.0664850185 |
| GSE13712_STATIC | Up | 0.1623256898 |
| GSE19018 | Down | -0.4575585726 |
| GSE19899_A1 | Up | 0.0581649133 |
| GSE19899_A2 | Up | 0.1978075410 |
| PubMed_21979375_A1 | Up | 0.6185075537 |
| PubMed_21979375_A2 | Up | 0.3937876066 |
| GSE35957 | Down | -0.3251051031 |
| GSE36640 | Down | -0.5493420139 |
| GSE54402 | Up | 0.1825908022 |
| GSE9593 | Down | -0.0444792829 |
| GSE43922 | Up | 0.5605780785 |
| GSE24585 | Down | -0.1755555196 |
| GSE37065 | Down | -0.0908067805 |
| GSE28863_A1 | Up | 0.0419364114 |
| GSE28863_A2 | Down | -0.2978401902 |
| GSE28863_A3 | Down | -0.0074915881 |
| GSE28863_A4 | Up | 0.0445305925 |
| GSE48662 | Down | -0.2615505267 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031762 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031762 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
