HCSGD entry for SCAMP2
1. General information
| Official gene symbol | SCAMP2 |
|---|---|
| Entrez ID | 10066 |
| Gene full name | secretory carrier membrane protein 2 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0006892 | Post-Golgi vesicle-mediated transport | TAS | biological_process |
| GO:0015031 | Protein transport | IDA IEA | biological_process |
| GO:0016021 | Integral component of membrane | IDA IEA | cellular_component |
| GO:0030133 | Transport vesicle | IEA | cellular_component |
| GO:0032588 | Trans-Golgi network membrane | IDA | cellular_component |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0055038 | Recycling endosome membrane | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0403944531 | 0.9824076707 | 0.4509088983 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3350132186 |
| GSE13712_SHEAR | Up | 0.1194706568 |
| GSE13712_STATIC | Down | -0.0652667186 |
| GSE19018 | Down | -0.0023748176 |
| GSE19899_A1 | Down | -0.2079881047 |
| GSE19899_A2 | Up | 0.4896648148 |
| PubMed_21979375_A1 | Up | 0.9404195711 |
| PubMed_21979375_A2 | Up | 0.7679520884 |
| GSE35957 | Up | 0.1309598525 |
| GSE36640 | Up | 0.5667206626 |
| GSE54402 | Up | 0.0782211491 |
| GSE9593 | Up | 0.1980116960 |
| GSE43922 | Up | 0.3800918015 |
| GSE24585 | Up | 0.0647579490 |
| GSE37065 | Up | 0.1317287836 |
| GSE28863_A1 | Up | 0.1194197385 |
| GSE28863_A2 | Up | 0.2880171325 |
| GSE28863_A3 | Up | 0.0813046042 |
| GSE28863_A4 | Down | -0.0373810088 |
| GSE48662 | Up | 0.2153141068 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020269 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT023203 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025921 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037485 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-23a-3p | MIMAT0000078 | MIRT050416 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
